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Functional Protein Design with Local Domain Alignment
April 29, 2024, 4:42 a.m. | Chaohao Yuan, Songyou Li, Geyan Ye, Yikun Zhang, Long-Kai Huang, Wenbing Huang, Wei Liu, Jianhua Yao, Yu Rong
cs.LG updates on arXiv.org arxiv.org
Abstract: The core challenge of de novo protein design lies in creating proteins with specific functions or properties, guided by certain conditions. Current models explore to generate protein using structural and evolutionary guidance, which only provide indirect conditions concerning functions and properties. However, textual annotations of proteins, especially the annotations for protein domains, which directly describe the protein's high-level functionalities, properties, and their correlation with target amino acid sequences, remain unexplored in the context of protein …
abstract alignment annotations arxiv challenge core cs.ai cs.lg current design domain explore functional functions generate guidance however lies protein proteins q-bio.qm textual type
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