Adding event notifications and result persistence to shell-scripted pipelines with Hasura

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In bioinformatics, computational pipelines developed as a bunch of shell scripts are ubiquitous. Although modern applications like Apache Airflow and cloud services such as Prefect offer more elegant, feature-rich solutions, the reality is that re-implementing an entire shell-scripted pipeline on a completely new platform is often too big a step for many. This is even more so the case when pipelines are passed down from long-gone postdocs or when …

database event graphql hasura pipeline pipelines