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CORE-BEHRT: A Carefully Optimized and Rigorously Evaluated BEHRT
April 24, 2024, 4:42 a.m. | Mikkel Odgaard, Kiril Vadimovic Klein, Sanne M{\o}ller Thysen, Espen Jimenez-Solem, Martin Sillesen, Mads Nielsen
cs.LG updates on arXiv.org arxiv.org
Abstract: BERT-based models for Electronic Health Records (EHR) have surged in popularity following the release of BEHRT and Med-BERT. Subsequent models have largely built on these foundations despite the fundamental design choices of these pioneering models remaining underexplored. To address this issue, we introduce CORE-BEHRT, a Carefully Optimized and Rigorously Evaluated BEHRT. Through incremental optimization, we isolate the sources of improvement for key design choices, giving us insights into the effect of data representation and individual …
abstract arxiv bert core cs.lg design ehr electronic electronic health records fundamental health issue records release type
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