Web: http://arxiv.org/abs/2201.10463

Jan. 26, 2022, 2:10 a.m. | Alexander Nesterov, Dmitry Umerenkov

cs.CL updates on arXiv.org arxiv.org

Medical entity extraction (EE) is a standard procedure used as a first stage
in medical texts processing. Usually Medical EE is a two-step process: named
entity recognition (NER) and named entity normalization (NEN). We propose a
novel method of doing medical EE from electronic health records (EHR) as a
single-step multi-label classification task by fine-tuning a transformer model
pretrained on a large EHR dataset. Our model is trained end-to-end in an
distantly supervised manner using targets automatically extracted from medical …

arxiv electronic health human records

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