Web: http://arxiv.org/abs/2106.02701

Jan. 31, 2022, 2:10 a.m. | Thomas L. Athey, Daniel J. Tward, Ulrich Mueller, Joshua T. Vogelstein, Michael I. Miller

cs.CV updates on arXiv.org arxiv.org

Recent advances in brain clearing and imaging have made it possible to image
entire mammalian brains at sub-micron resolution. These images offer the
potential to assemble brain-wide atlases of neuron morphology, but manual
neuron reconstruction remains a bottleneck. Several automatic reconstruction
algorithms exist, but most focus on single neuron images. In this paper, we
present a probabilistic reconstruction method, ViterBrain, which combines a
hidden Markov state process that encodes neuron geometry with a random field
appearance model of neuron fluorescence. …

arxiv cv markov modeling

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