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Modeling DNA Sequences with PyTorch
Sept. 16, 2022, 5:50 p.m. | Erin Wilson
Towards Data Science - Medium towardsdatascience.com
A beginner-friendly tutorial
Image by authorDNA is a complex data stream. While it can be represented by a string of ACTGs, it is filled with intricate patterns and structural nuances that are difficult for humans to understand just by looking at a raw sequence of nucleotides. In recent years, much progress has been made towards modeling DNA data using deep learning.
Researchers have applied methods such as convolutional neural networks (CNN), long-short term memory networks (LSTMs), and even transformers …
data science deep-dives deep learning dna editors pick genomics modeling pytorch
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