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Nutmeg and SPICE: Models and Data for Biomolecular Machine Learning
June 21, 2024, 4:48 a.m. | Peter Eastman, Benjamin P. Pritchard, John D. Chodera, Thomas E. Markland
cs.LG updates on arXiv.org arxiv.org
Abstract: We describe version 2 of the SPICE dataset, a collection of quantum chemistry calculations for training machine learning potentials. It expands on the original dataset by adding much more sampling of chemical space and more data on non-covalent interactions. We train a set of potential energy functions called Nutmeg on it. They use a novel mechanism to improve performance on charged and polar molecules, injecting precomputed partial charges into the model to provide a reference …
abstract arxiv chemistry collection cs.lg data dataset interactions machine machine learning physics.chem-ph potential quantum quantum chemistry sampling set space train training type
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