Predicting relations between SOAP note sections: The value of incorporating a clinical information model

To support human annotation, we first annotate 100 Assessment and Plan subsections manually using Prodigy, and then use spacy-transformers to fine-tune a general domain RoBERTa-base model pretrained on OntoNotes 5 for both the Assessment and Plan section NER tagging.

annotation assessment biomedical clinical domain general human information ner paper prodigy relations roberta spacy support tagging transformers value