Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information

arXiv:2403.05602v1 Announce Type: cross
Abstract: Because protein-protein interactions (PPIs) are crucial to understand living systems, harvesting these data is essential to probe disease development and discern gene/protein functions and biological processes. Some curated datasets contain PPI data derived from the literature and other sources (e.g., IntAct, BioGrid, DIP, and HPRD). However, they are far from exhaustive, and their maintenance is a labor-intensive process. On the other hand, machine learning methods to automate PPI knowledge extraction from the scientific literature have …

arxiv attention biomedical context cs.cl cs.lg information interactions literature protein q-bio.bm relational type